This course will train scientists in molecular and genomic techniques for microbiological diagnostics and infection epidemiology.

TOPICS COVERED

The course will cover a range of diagnostic techniques including:

• Design, implementation, and interpretation of real-time PCR tests for pathogen detection
• Molecular approaches to detect multiple pathogens
• Whole genome sequencing (WGS)
• PCR and sequence-based isolate characterisation
• Bioinformatics analysis and data interpretation
• Outbreak investigation and public health application
• Monitoring response to treatment
• Data analysis, interpretation, display and dissemination

Topics included in practical classes, demonstrations, and/or lectures:

• Theoretical concepts for modernising and developing a molecular diagnostic service
• Conceptual basis and background to microbial phylogenetic analysis and population biology
• Specimen collection and contamination problems
• Whole genome sequencing technologies and clinical applications
• Technique discrimination – identifying the question and choosing the appropriate technique
• Case studies demonstrating the relative merits of different approaches
• Presenting molecular data in the context of clinical scenarios

WHO SHOULD ATTEND?

• Clinical scientists
• Specialist registrars or consultants in medical microbiology

SPEAKERS

• Martin Maiden, University of Oxford, UK
• Stephen Gillespie, University of St Andrews, UK
• Katarina Oravcova, University of Glasgow, UK
• Charlene Rodrigues, University of Oxford, UK

For more information, please contact: [email protected]